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ELASTIX and dMRI

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I’m doing my masters project on diffusion MRI image processing, and am currently looking at the typical registration methods used. I am focusing on ELASTIX/ITK, and so would love to hear about the typical image processing pipelines any of you use if you use this program!

What kind of transformations do you use? Do you use rigid, affine, spline etc? How do you combine these? Do you tailor your registration method to each individual?

I know the ELASTIX manual is comprehensive, so I’m just looking to find out how it is actually applied and used by radiologists. FYI my study is focused on the brain. I really appreciate any information you can share!

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